Single-cell RNA-seq Analysis

Explore gene expression patterns at single-cell resolution across various cassava tissues

Single-cell RNA Sequencing Analysis

Analysis Parameters
Dataset Overview
Cassava Tuberous Root scRNA-seq Atlas
Two developmental stages (S1, S2)
Reference: Song et al., 2023
Total Cells: -
Cell Types: -
Technology: 10x Genomics
Selected Gene: -
Cell Type Information
Identified Cell Types (28 clusters)
Vascular Bundle IPAP (Initial Procambial Cells) Xylem Endodermis Exodermis Phloem Meristem Pericycle
Procambium Trichoblast Cortex Epidermis Columella Metaxylem Casparian Strip Rare
Key Research Findings
  • Differentiation Trajectory: Identified vascular and cortical tissue development pathways
  • Rare Cell Discovery: Found Casparian strip cells through pseudotime analysis
  • Developmental Stages: S1 and S2 stages showing distinct expression patterns
  • Technical Innovation: Novel protoplast isolation for starch-rich organs
Visualization Results
🔍 UMAP visualization showing 28 cell clusters from cassava tuberous roots, colored by authentic cell types (IPAP, xylem, endodermis, phloem, etc.)