Metabolite Genome-Wide Association Study (mGWAS)

Visualizing associations between cassava metabolites and genome-wide SNPs with interactive Manhattan plots

Research Context: This visualization presents data from a comprehensive study analyzing 2,980 metabolic features in 299 cultivated cassava accessions, revealing 18,218 significant marker-metabolite associations underlying nutrient quality variation and domestication of cassava storage root. View Original Research (Genome Biology 2023)
Cassava genome: 18 chromosomes (Chr1-Chr18)
489 annotated metabolites from cassava storage root analysis
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Total Signals
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Significant Signals
Manhattan Plot
Signal Details
Storage root metabolic variations associated with genetic markers

Click on a point in the Manhattan plot to view details

Significant Marker-Metabolite Associations
Metabolite ID Compound Name Class Lead SNP Chromosome Position -log10(p-value) Pheno Var